Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs6821653 chr4:9658781 G/A 9.25E-9 117 40.67 42.9 12.63 KM Plot
THYM rs6821992 chr4:12564208 G/C 1.01E-6 118 38.23 57.27 12.78 KM Plot
THYM rs6823741 chr4:1291246 C/T 1.48E-6 115 41.77 50.47 12.63 KM Plot
THYM rs6825142 chr4:9592142 A/G 7.93E-9 118 41.22 42.9 12.63 KM Plot
THYM rs6833312 chr4:98951356 A/T 0.000195 119 39.75 35.13 56.17 KM Plot
THYM rs6833822 chr4:98951354 G/A 0.000195 119 39.75 35.13 56.17 KM Plot
THYM rs6834366 chr4:9658004 C/A 9.25E-9 117 40.67 42.9 12.63 KM Plot
THYM rs6835175 chr4:9658351 C/T 9.25E-9 117 40.67 42.9 12.63 KM Plot
THYM rs6835200 chr4:9658382 C/T 9.25E-9 117 40.67 42.9 12.63 KM Plot
THYM rs6836851 chr4:9661477 G/A 9.25E-9 117 40.67 42.9 12.63 KM Plot
THYM rs6838400 chr4:6295427 C/G 1.43E-6 118 25.83 38.58 50.1 KM Plot
THYM rs6838964 chr4:12576698 C/G 1.01E-6 118 38.23 57.27 12.78 KM Plot
THYM rs6842047 chr4:187133576 A/C 1.1E-8 119 12.63 36.63 42.82 KM Plot
THYM rs6842974 chr4:9654882 G/T 9.25E-9 117 40.67 42.9 12.63 KM Plot
THYM rs6848799 chr4:1291249 A/G 1.48E-6 115 41.77 50.47 12.63 KM Plot